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RNA-seq analysis · Sample cohort v2
Run differential expression on treated vs control samples, filter FDR < 0.05, generate volcano plot.
Parsed your request using DESeq2. Detected 6 samples across 2 groups. Reviewing inputs before launch…
Analysis Plan
WorkflowDifferential Expression (DESeq2)
Samples6 (3 treated, 3 control)
OutputsTable, Volcano, Heatmap, Report
Est. runtime~3 min · 4 credits
Approve & Run
Edit
Outputs
DE Results.csv
table
volcano_plot.png
figure
heatmap.png
figure
Analysis Report
report
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Drag and drop CSV, TSV, FASTQ, BAM, H5AD, or VCF files. Files are validated, previewed, and organized into your workspace.

2

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Type what you need — "Run differential expression, filter by FDR < 0.05, generate a volcano plot." The system converts it to a structured workflow.

3

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Outputs include figures, downloadable tables, a written report with methods, key findings, and full provenance metadata.

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Drag and drop any format — CSV, FASTQ, H5AD, VCF, BAM. Files are validated on upload, previewed in your workspace, and ready for analysis in seconds.

CSV
rnaseq_counts.csv
2.3 MB
H5A
pbmc_10x.h5ad
429 MB
CSV
sample_metadata.csv
11 KB
VCF
variants.vcf
847 MB
AI Analysis

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Type your analysis in plain English. NuHelix AI parses your intent, detects your files and conditions, and builds a structured workflow — which you review and approve before anything runs.

Run DE on treated vs control, FDR < 0.05, generate volcano plot
Parsed. DESeq2 workflow detected. 6 samples, 2 groups confirmed.
✓ Analysis Plan Ready
WorkflowDESeq2
Runtime~3 min
Results

Publication-quality results, every time.

Every analysis produces typed artifacts: volcano plots, heatmaps, DE result tables, and a full written report with methods, findings, and provenance metadata.

Volcano Plot
ready
DE Results.csv
ready
Analysis Report
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Invite colleagues with role-based access. Share projects, reports, and sessions. Every analysis is reproducible — re-run from the exact same inputs at any time.

JC
Dr. Jordan Chen
Owner
Active
PP
Dr. Priya Patel
Analyst
Active
MW
Marcus Webb
Viewer
Active
10K+
Analyses run
99.9%
Reproducibility rate
< 5min
Average job runtime
12+
Supported file formats

Sample outputs

Publication-quality
results, every time.

Every analysis produces typed, downloadable artifacts. No copy-pasting from notebook cells.

FigureDifferential Expression

Volcano Plot

Differentially expressed genes with significance thresholds annotated.

Genelog2FCpadj
BRCA22.412.1e-8
TP53-1.874.3e-6
EGFR1.631.2e-5
MYC3.128.7e-5
TableStatistical output

DE Results

Top differentially expressed genes ranked by adjusted p-value.

ReportFull report

Analysis Report

Executive summary, methods, key findings, and provenance metadata.

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