Comprehensive scientific
workflow platform
NuHelix AI orchestrates validated, reproducible bioinformatics workflows — from raw reads to publication-ready figures — powered by the tools your lab already trusts.
Every stage of your pipeline
From raw QC to pathway enrichment — each workflow category runs validated tools in the correct order, with full provenance tracking.
Quality Control
Assess raw sequencing data quality, trim adapters, and filter low-quality reads before downstream analysis.
Alignment & Mapping
Align short or long reads to reference genomes using splice-aware and standard alignment algorithms.
Quantification
Generate read count matrices and transcript abundance estimates from aligned or raw reads.
Differential Expression
Identify statistically significant changes in gene expression between experimental conditions.
Single-Cell Analysis
Cluster, annotate, and interpret single-cell transcriptomic data from diverse tissue types.
Variant Analysis
Detect and annotate SNPs, indels, and structural variants from whole-genome or exome data.
Pathway Enrichment
Assess biological pathway activity and gene ontology enrichment from ranked gene lists.
Visualization & Reporting
Generate publication-quality figures, interactive plots, and structured analysis reports.
Grounded in curated biological databases
Annotations, pathway data, and reference assemblies are sourced from trusted public databases and kept up to date.
NCBI / GenBank
Nucleotide sequences, gene records, and reference assemblies from NCBI.
Ensembl
Gene annotation, comparative genomics, and regulatory features for vertebrates.
UCSC Genome Browser
Genome assemblies, tracks, and conservation data for human and model organisms.
KEGG
Pathway maps, disease associations, and biochemical reaction networks.
Gene Ontology (GO)
Structured biological vocabulary for gene function annotation and enrichment.
Reactome
Curated human biological pathways with experimentally validated reactions.
From question to publishable output
The platform bridges your research intent and validated computational tools — no scripting, no environment setup.
You describe what you need
Plain language input
Workflow is selected and validated
Structured plan preview
Tools run on cloud infrastructure
Real compute, real tools
Results, figures, and report generated
Full provenance attached